Projects

A selection of public open-source projects I contribute to. See my GitHub profile for more.

LPhy ecosystem

• linguaPhylo (LPhy) - probabilistic programming language for phylogenetic models
• LPhyBeast - converts LPhy model scripts to BEAST XML

BEAST

• BEAST 2 - Bayesian evolutionary analysis platform
• BEAST 3 - next-generation BEAST platform
• beast2lang - concise model specification language for BEAST 2
• beast-package-skeleton - template for BEAST 3 add-on packages

PhyloSpec

• PhyloSpec - a shared standard and modelling language for phylogenetic models: write a model once, run it across engines like BEAST X, BEAST 2 and RevBayes (source)

Teaching

• bayesian_phylo_lectures - lecture materials for Bayesian phylogenetics

Interactive simulations

• Coalescence in the Wright-Fisher model - in-browser simulation

Quantitative Analysis of Sport Climbing

• climbing-grades - rock climbing grade analysis
• Climbing Grade Difficulty - in-browser logistic model of climbing grades